2022
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Journal Articles
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Mete D; Goktas, Sanli-Mohamed G; G Fabrication and in vitro evaluation of thermally cross-linked gelatin nanofibers for drug delivery applications Journal Article Preparative Biochemistry & Biotechnology, pp. 11–18, 2022. BibTeX @article{mete2022fabrication,
title = {Fabrication and in vitro evaluation of thermally cross-linked gelatin nanofibers for drug delivery applications},
author = {Mete, D; Goktas, G; Sanli-Mohamed, G},
year = {2022},
date = {2022-01-01},
journal = {Preparative Biochemistry & Biotechnology},
pages = {11--18},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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2021
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Journal Articles
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Aksoy, Hatice Nurdan ; Ceylan, Cagatay Comparison of the Effects of Statins on A549 Nonsmall-Cell Lung Cancer Cell Line Lipids Using Fourier Transform Infrared Spectroscopy: Rosuvastatin Stands Out Journal Article Lipids, 56 , pp. 289–299, 2021. BibTeX @article{aksoy2021comparison,
title = {Comparison of the Effects of Statins on A549 Nonsmall-Cell Lung Cancer Cell Line Lipids Using Fourier Transform Infrared Spectroscopy: Rosuvastatin Stands Out},
author = {Aksoy, Hatice Nurdan and Ceylan, Cagatay},
year = {2021},
date = {2021-01-01},
journal = {Lipids},
volume = {56},
pages = {289--299},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Tamburaci, Sedef ; Tihminlioglu, Funda Development of Si doped nano hydroxyapatite reinforced bilayer chitosan nanocomposite barrier membranes for guided bone regeneration Journal Article Materials Science and Engineering: C, pp. 112298, 2021. BibTeX @article{tamburaci2021development,
title = {Development of Si doped nano hydroxyapatite reinforced bilayer chitosan nanocomposite barrier membranes for guided bone regeneration},
author = {Tamburaci, Sedef and Tihminlioglu, Funda},
year = {2021},
date = {2021-01-01},
journal = {Materials Science and Engineering: C},
pages = {112298},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Zelcak, Aykut ; Unal, Yagmur Ceren ; Mese, Gulistan ; Bulmus, Volga A diaminoethane motif bearing low molecular weight polymer as a new nucleic acid delivery agent Journal Article Journal of Drug Delivery Science and Technology, pp. 102551, 2021. BibTeX @article{zelcak2021diaminoethane,
title = {A diaminoethane motif bearing low molecular weight polymer as a new nucleic acid delivery agent},
author = {Zelcak, Aykut and Unal, Yagmur Ceren and Mese, Gulistan and Bulmus, Volga},
year = {2021},
date = {2021-01-01},
journal = {Journal of Drug Delivery Science and Technology},
pages = {102551},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Bostan, Fatmanur ; Surmeli, Nur Basak Cloning, expression, and characterization of a novel sericin-like protein Journal Article Biotechnology and Applied Biochemistry, 2021. BibTeX @article{bostan2021cloning,
title = {Cloning, expression, and characterization of a novel sericin-like protein},
author = {Bostan, Fatmanur and Surmeli, Nur Basak},
year = {2021},
date = {2021-01-01},
journal = {Biotechnology and Applied Biochemistry},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Tercan C; Surmeli, Sanli-Mohamed Y; G Thermoalkalophilic recombinant esterase entrapment in chitosan/calcium/alginate-blended beads and its characterization Journal Article Journal of Chemical Technology & Biotechnology, pp. 2257–2264, 2021. BibTeX @article{tercan2021thermoalkalophilic,
title = {Thermoalkalophilic recombinant esterase entrapment in chitosan/calcium/alginate-blended beads and its characterization},
author = {Tercan, C; Surmeli, Y; Sanli-Mohamed, G},
year = {2021},
date = {2021-01-01},
journal = {Journal of Chemical Technology & Biotechnology},
pages = {2257--2264},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Baykara SG; Surmeli, Sanli-Mohamed Y; G Purification and biochemical characterization of a novel thermostable serine protease from Geobacillus sp. GS53 Journal Article Applied Biochemistry and Biotechnology, pp. 1574–1584, 2021. BibTeX @article{baykara2021purification,
title = {Purification and biochemical characterization of a novel thermostable serine protease from Geobacillus sp. GS53},
author = {Baykara, SG; Surmeli, Y; Sanli-Mohamed, G},
year = {2021},
date = {2021-01-01},
journal = {Applied Biochemistry and Biotechnology},
pages = {1574--1584},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Firatligil-Yildirir, Burcu ; Bati-Ayaz, Gizem ; Tahmaz, Ismail ; Bilgen, Muge ; Pesen-Okvur, Devrim ; Yalcin-Ozuysal, Ozden On-chip determination of tissue-specific metastatic potential of breast cancer cells Journal Article Biotechnology and Bioengineering, pp. 3799–3810, 2021. BibTeX @article{firatligil2021chip,
title = {On-chip determination of tissue-specific metastatic potential of breast cancer cells},
author = {Firatligil-Yildirir, Burcu and Bati-Ayaz, Gizem and Tahmaz, Ismail and Bilgen, Muge and Pesen-Okvur, Devrim and Yalcin-Ozuysal, Ozden},
year = {2021},
date = {2021-01-01},
journal = {Biotechnology and Bioengineering},
pages = {3799--3810},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Oz Y; Surmeli, Sanli-Mohamed Y; G Enhanced thermostability of the immobilized thermoalkalophilic esterase onto magnetic-cornstarch nanoparticle Journal Article Biotechnology and Applied Biochemistry, 2021. BibTeX @article{oz2021enhanced,
title = {Enhanced thermostability of the immobilized thermoalkalophilic esterase onto magnetic-cornstarch nanoparticle},
author = {Oz, Y; Surmeli, Y; Sanli-Mohamed, G},
year = {2021},
date = {2021-01-01},
journal = {Biotechnology and Applied Biochemistry},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Algan M; Surmeli, Sanli-Mohamed Y; G A novel thermostable xylanase from Geobacillus vulcani GS90: Production, biochemical characterization, and its comparative application in fruit juice enrichment Journal Article Journal of Food Biochemistry, 2021. BibTeX @article{algan2021novel,
title = {A novel thermostable xylanase from Geobacillus vulcani GS90: Production, biochemical characterization, and its comparative application in fruit juice enrichment},
author = {Algan, M; Surmeli, Y; Sanli-Mohamed, G},
year = {2021},
date = {2021-01-01},
journal = {Journal of Food Biochemistry},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Yucel, Muge ; Koc, Altug ; Ulgenalp, Ayfer ; Akkoc, Gun Deniz ; Ceyhan, Metin ; Yildiz, Umit Hakan PCR-Free Methodology for Detection of Single-Nucleotide Polymorphism with a Cationic Polythiophene Reporter Journal Article ACS sensors, 2021. BibTeX @article{yucel2021pcr,
title = {PCR-Free Methodology for Detection of Single-Nucleotide Polymorphism with a Cationic Polythiophene Reporter},
author = {Yucel, Muge and Koc, Altug and Ulgenalp, Ayfer and Akkoc, Gun Deniz and Ceyhan, Metin and Yildiz, Umit Hakan},
year = {2021},
date = {2021-01-01},
journal = {ACS sensors},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Ayanzadeh A; Ozuysal, OY; Okvur DP; Onal Toreyin BU; Unay S; D Improved cell segmentation using deep learning in label-free optical microscopy images Journal Article Turkish Journal of Electrical Engineering & Computer Sciences, 2021. BibTeX @article{ayanzadeh2021improved,
title = {Improved cell segmentation using deep learning in label-free optical microscopy images},
author = {Ayanzadeh, A; Ozuysal, OY; Okvur, DP; Onal, S; Toreyin, BU; Unay, D},
year = {2021},
date = {2021-01-01},
journal = {Turkish Journal of Electrical Engineering & Computer Sciences},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Onal, Sevgi ; Turker-Burhan, Merve ; Bati-Ayaz, Gizem ; Yanik, Hamdullah ; Pesen-Okvur, Devrim Breast cancer cells and macrophages in a paracrine-juxtacrine loop Journal Article Biomaterials, 2021. BibTeX @article{onal2021breast,
title = {Breast cancer cells and macrophages in a paracrine-juxtacrine loop},
author = {Onal, Sevgi and Turker-Burhan, Merve and Bati-Ayaz, Gizem and Yanik, Hamdullah and Pesen-Okvur, Devrim},
year = {2021},
date = {2021-01-01},
journal = {Biomaterials},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Rudzinska M; Daglioglu, Savvateeva LV; Kaci FN; Antoine Zamyatnin AA C; R; Current status and perspectives of protease inhibitors and their combination with nanosized drug delivery systems for targeted cancer therapy Journal Article Drug design, development and therapy, 2021. BibTeX @article{rudzinska2021current,
title = {Current status and perspectives of protease inhibitors and their combination with nanosized drug delivery systems for targeted cancer therapy},
author = {Rudzinska, M; Daglioglu, C; Savvateeva, LV; Kaci, FN; Antoine, R; Zamyatnin, AA},
year = {2021},
date = {2021-01-01},
journal = {Drug design, development and therapy},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Cecen, Berivan ; Karavasili, Christina ; Nazir, Mubashir ; Bhusal, Anant ; Dogan, Elvan ; Shahriyari, Fatemeh ; Tamburaci, Sedef ; Buyukoz, Melda ; Kozaci, Leyla Didem ; Miri, Amir K Multi-organs-on-chips for testing small-molecule drugs: Challenges and perspectives Journal Article Pharmaceutics, 2021. BibTeX @article{cecen2021multi,
title = {Multi-organs-on-chips for testing small-molecule drugs: Challenges and perspectives},
author = {Cecen, Berivan and Karavasili, Christina and Nazir, Mubashir and Bhusal, Anant and Dogan, Elvan and Shahriyari, Fatemeh and Tamburaci, Sedef and Buyukoz, Melda and Kozaci, Leyla Didem and Miri, Amir K},
year = {2021},
date = {2021-01-01},
journal = {Pharmaceutics},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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2020
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Inproceedings
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Ayanzadeh, Aydin ; Ozuysal, Ozden Yalcin ; Okvur, Devrim Pesen ; Onal, Sevgi ; Toreyin, Behcet Ugur ; Unay, Devrim Deep learning based segmentation pipeline for label-free phase-contrast microscopy images Inproceedings Deep learning based segmentation pipeline for label-free phase-contrast microscopy images, pp. 1–4, IEEE, 2020. BibTeX @inproceedings{ayanzadeh2020deep,
title = {Deep learning based segmentation pipeline for label-free phase-contrast microscopy images},
author = {Ayanzadeh, Aydin and Ozuysal, Ozden Yalcin and Okvur, Devrim Pesen and Onal, Sevgi and Toreyin, Behcet Ugur and Unay, Devrim},
year = {2020},
date = {2020-01-01},
booktitle = {Deep learning based segmentation pipeline for label-free phase-contrast microscopy images},
pages = {1--4},
publisher = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
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Kayan, Emre ; Onal, Sevgi ; Okvur, Devrim P; Toreyin, Behcet Ugur ; Unay, Devrim ; others, A Preliminary Study on Cell Motility Analysis from Phase-Contrast Microscopy Image Series Inproceedings 2020 Medical Technologies Congress (TIPTEKNO), IEEE, 2020. BibTeX @inproceedings{kayan2020preliminary,
title = {A Preliminary Study on Cell Motility Analysis from Phase-Contrast Microscopy Image Series},
author = {Kayan, Emre and Onal, Sevgi and Okvur, Devrim P and Toreyin, Behcet Ugur and Unay, Devrim and others},
year = {2020},
date = {2020-01-01},
booktitle = {2020 Medical Technologies Congress (TIPTEKNO)},
publisher = {IEEE},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
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Journal Articles
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Burhanoglu, Tulin ; Surmeli, Yusuf ; Sanli-Mohamed, Gulsah Identification and characterization of novel thermostable $alpha$-amylase from Geobacillus sp. GS33 Journal Article International Journal of Biological Macromolecules, 164 , pp. 578–585, 2020. BibTeX @article{burhanouglu2020identification,
title = {Identification and characterization of novel thermostable $\alpha$-amylase from Geobacillus sp. GS33},
author = {Burhanoglu, Tulin and Surmeli, Yusuf and Sanli-Mohamed, Gulsah},
year = {2020},
date = {2020-01-01},
journal = {International Journal of Biological Macromolecules},
volume = {164},
pages = {578--585},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Cetinkaya H; Yildiz, MS; Kutluer Alkan Otas HO; Cagir M; A; A Novel 2′-alkoxymethyl substituted klavuzon derivatives as inhibitors of Topo I and CRM1 Journal Article Bioorganic Chemistry, 103 , pp. 104162, 2020. BibTeX @article{ccetinkaya2020novel,
title = {Novel 2′-alkoxymethyl substituted klavuzon derivatives as inhibitors of Topo I and CRM1},
author = {Cetinkaya, H; Yildiz, MS; Kutluer, M; Alkan, A; Otas, HO; Cagir, A},
year = {2020},
date = {2020-01-01},
journal = {Bioorganic Chemistry},
volume = {103},
pages = {104162},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Ceylan, Cagatay ; Aksoy, Hatice Nurdan ; Cagir, Ali ; Cetinkaya, Hakki 2’-methylklavuzon causes lipid-lowering effects on A549 non-small cell lung cancer cells and significant changes on DNA structure evidenced by fourier transform infrared spectroscopy Journal Article Vibrational Spectroscopy, 111 , pp. 103148, 2020. BibTeX @article{ceylan20202,
title = {2’-methylklavuzon causes lipid-lowering effects on A549 non-small cell lung cancer cells and significant changes on DNA structure evidenced by fourier transform infrared spectroscopy},
author = {Ceylan, Cagatay and Aksoy, Hatice Nurdan and Cagir, Ali and Cetinkaya, Hakki},
year = {2020},
date = {2020-01-01},
journal = {Vibrational Spectroscopy},
volume = {111},
pages = {103148},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Gokce, Begum ; Akcok, Ismail ; Cagir, Ali ; Pesen-Okvur, Devrim A new drug testing platform based on 3D tri-culture in lab-on-a-chip devices Journal Article European Journal of Pharmaceutical Sciences, 155 , pp. 105542, 2020. BibTeX @article{gokce2020new,
title = {A new drug testing platform based on 3D tri-culture in lab-on-a-chip devices},
author = {Gokce, Begum and Akcok, Ismail and Cagir, Ali and Pesen-Okvur, Devrim},
year = {2020},
date = {2020-01-01},
journal = {European Journal of Pharmaceutical Sciences},
volume = {155},
pages = {105542},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Gunes, Seda ; Tamburaci, Sedef ; Tihminlioglu, Funda A novel bilayer zein/MMT nanocomposite incorporated with H. perforatum oil for wound healing Journal Article Journal of Materials Science: Materials in Medicine, pp. 1–19, 2020. BibTeX @article{gunes2020novel,
title = {A novel bilayer zein/MMT nanocomposite incorporated with H. perforatum oil for wound healing},
author = {Gunes, Seda and Tamburaci, Sedef and Tihminlioglu, Funda},
year = {2020},
date = {2020-01-01},
journal = {Journal of Materials Science: Materials in Medicine},
pages = {1--19},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Kara, Aylin ; Gunes, Oylum C; Albayrak, Aylin Z; Bilici, Gokcen ; Erbil, Guven ; Havitcioglu, Hasan Fish scale/poly(3-hydroxybutyrate-co-3-hydroxyvalerate) nanofibrous composite scaffolds for bone regeneration Journal Article Journal of Biomaterials Applications, pp. 1201–1215, 2020. BibTeX @article{kara2020fish,
title = {Fish scale/poly(3-hydroxybutyrate-co-3-hydroxyvalerate) nanofibrous composite scaffolds for bone regeneration},
author = {Kara, Aylin and Gunes, Oylum C and Albayrak, Aylin Z and Bilici, Gokcen and Erbil, Guven and Havitcioglu, Hasan},
year = {2020},
date = {2020-01-01},
journal = {Journal of Biomaterials Applications},
pages = {1201--1215},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
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Tamburaci, Sedef ; Tihminlioglu, Funda Chitosan-hybrid poss nanocomposites for bone regeneration: The effect of poss nanocage on surface, morphology, structure and in vitro bioactivity Journal Article International Journal of Biological Macromolecules, pp. 643–657, 2020. BibTeX @article{tamburaci2020chitosan,
title = {Chitosan-hybrid poss nanocomposites for bone regeneration: The effect of poss nanocage on surface, morphology, structure and in vitro bioactivity},
author = {Tamburaci, Sedef and Tihminlioglu, Funda},
year = {2020},
date = {2020-01-01},
journal = {International Journal of Biological Macromolecules},
pages = {643--657},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Zeybek N; Rastall, RA; Buyukkileci AO Utilization of xylan-type polysaccharides in co-culture fermentations of Bifidobacterium and Bacteroides species Journal Article Carbohydrate Polymers, 236 , pp. 116076, 2020. BibTeX @article{zeybek2020utilization,
title = {Utilization of xylan-type polysaccharides in co-culture fermentations of Bifidobacterium and Bacteroides species},
author = {Zeybek, N; Rastall, RA; Buyukkileci, AO},
year = {2020},
date = {2020-01-01},
journal = {Carbohydrate Polymers},
volume = {236},
pages = {116076},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2019
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Journal Articles
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Aslantas, Yaprak; Surmeli, Nur Basak Effects of N-Terminal and C-Terminal Polyhistidine Tag on the Stability and Function of the Thermophilic P450 CYP119 Journal Article Bioinorganic Chemistry and Applications, 2019 , 2019. BibTeX @article{aslantas2019effects,
title = {Effects of N-Terminal and C-Terminal Polyhistidine Tag on the Stability and Function of the Thermophilic P450 CYP119},
author = {Yaprak Aslantas and Nur Basak Surmeli},
year = {2019},
date = {2019-01-01},
journal = {Bioinorganic Chemistry and Applications},
volume = {2019},
publisher = {Hindawi},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
i, Hatice K{i}z; ç, Melis Kü; Duman, Seda; Bedіr, Erdal Flavonol glycosides from Reseda lutea L Journal Article Phytochemistry letters, 30 , pp. 150–153, 2019. BibTeX @article{kiziltacs2019flavonol,
title = {Flavonol glycosides from Reseda lutea L},
author = {Hatice K{i}z{i}lta ş and Melis Kü ç and Seda Duman and Erdal Bedіr},
year = {2019},
date = {2019-01-01},
journal = {Phytochemistry letters},
volume = {30},
pages = {150--153},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Bayazeid, Omer; Bedir, Erdal; Yalcin, Funda N Ligand-based virtual screening and molecular docking of two cytotoxic compounds isolated from Papaver lacerum Journal Article Phytochemistry letters, 30 , pp. 26–30, 2019. BibTeX @article{bayazeid2019ligand,
title = {Ligand-based virtual screening and molecular docking of two cytotoxic compounds isolated from Papaver lacerum},
author = {Omer Bayazeid and Erdal Bedir and Funda N Yalcin},
year = {2019},
date = {2019-01-01},
journal = {Phytochemistry letters},
volume = {30},
pages = {26--30},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Kahraman, Cigdem; Topcu, Gulacti; Bedir, Erdal; Tatli, Irem I; Ekizoglu, Melike; Akdemir, Zeliha S Phytochemical screening and evaluation of the antimicrobial and antioxidant activities of Ferula caspica M. Bieb. extracts Journal Article Saudi Pharmaceutical Journal, 27 (4), pp. 525–531, 2019. BibTeX @article{kahraman2019phytochemical,
title = {Phytochemical screening and evaluation of the antimicrobial and antioxidant activities of Ferula caspica M. Bieb. extracts},
author = {Cigdem Kahraman and Gulacti Topcu and Erdal Bedir and Irem I Tatli and Melike Ekizoglu and Zeliha S Akdemir},
year = {2019},
date = {2019-01-01},
journal = {Saudi Pharmaceutical Journal},
volume = {27},
number = {4},
pages = {525--531},
publisher = {Elsevier},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Incollections
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Gülcemal, Derya; Aslanipour, Behnaz; Bedir, Erdal Secondary Metabolites from Turkish Astragalus Species Incollection Plant and Human Health, Volume 2, pp. 43–97, Springer, 2019. BibTeX @incollection{gulcemal2019secondary,
title = {Secondary Metabolites from Turkish Astragalus Species},
author = {Derya Gülcemal and Behnaz Aslanipour and Erdal Bedir},
year = {2019},
date = {2019-01-01},
booktitle = {Plant and Human Health, Volume 2},
pages = {43--97},
publisher = {Springer},
keywords = {},
pubstate = {published},
tppubtype = {incollection}
}
|
